BioPortal™ Publications

Edited Books

NSF 2007PAISI 2007ISI 2007National Security 2007ISI 2006ISI 2005 
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Zeng, D., Gotham, I., Komatsu, K., Lynch, C., Thurmond, M., Madigan, D., Lober, B., Kvach, J., and Chen, H. (eds.) (2007). “Intelligence and Security Informatics: Biosurveillance,” NSF Biosurveillance Workshop: Systems and Case Studies, BioSurveillance 2007 Proceedings, Springer, Lecture Notes in Computer Science, No. 4506.

Yang, C., Zeng, D., Chau, M., Chang, K., Yang, Q., Cheng, X., Wang, J., Wang, F.-Y., and Chen, H. (eds.) (2007). “Intelligence and Security Informatics,” Pacific Asia Workshop, PAISI 2007 Proceedings, Springer, Lecture Notes in Computer Science, No. 4430.

Mehrotra, S., Zeng, D., Chen, H., Thuraisingham, B., and Wang, F.-Y. (eds.) (2006). “Intelligence and Security Informatics,” IEEE International Conference on Intelligence and Security Informatics, ISI 2006 Proceedings, Springer, Lecture Notes in Computer Science, No. 3975.

Chen, H., Raghu, T.S., Ramesh, R., Vinze, A., and Zeng, D. (eds.) (2007). “Handbooks in Information Systems: National Security,” Elsevier.

Chen, H., Wang, F.-Y., Yang, C., Zeng, D., Chau, M., and Chang, K. (eds.) (2006). “Intelligence and Security Informatics,” International Workshop, WISI 2006 Proceedings, Springer, Lecture Notes in Computer Science, No. 3917.

Kantor, P., Muresan, G., Roberts, F., Zeng, D., Wang, F.-Y., Chen, H., and Merkle, R. (eds.) (2005). “Intelligence and Security Informatics,” IEEE International Conference on Intelligence and Security Informatics, ISI 2005 Proceedings, Springer, Lecture Notes in Computer Science, No. 3495.


Journal Articles

Zeng, D., Chen, H., and Lynch, C. “BioPortal: Sharing, Analyzing, and Visualizing Infectious Disease Information,” Communications of the ACM, forthcoming, 2007.

Lu, H.-M., Zeng, D., Trujillo, L., Komatsu, K., and Chen, H. (2007). “Ontology-enhanced Automatic Chief Complaint Classification for Syndromic Surveillance,” accepted for publication in Journal of Biomedical Informatics.

Yan, P., Chen, H., and Zeng, D. (2007). “Syndromic Surveillance Systems: Public Health and Biodefence,” Annual Review of Information Science and Technology (ARIST), Vol. 41, pp. 425-495.

Hu, P.-J.H., Zeng, D., Chen, H., Larson, C., Chang, W., Tseng, C., and Ma, J. (2007). “System for Infectious Disease Information Sharing and Analysis: Design and Evaluation,” IEEE Transactions on Information Technology in Biomedicine, Vol. 11, No. 4, pp. 483–492, July.

Zeng, D., Dai, R.-W., Wang, F.-Y., Mao, W., and Wang, Q.-Y., “Infectious Disease Informatics and Syndromic Surveillance,” Science and Technology Review (Chinese).

Chang, W., Zeng, D., and Chen, H. “A Spatio-Temporal Data Analysis Approach based on Prospective Support Vector Clustering,” under revision for Decision Support Systems.

Book Chapters

Thurmond, M., Perez, A., Tseng, C., Chen, H., and Zeng, D. (2007) “Global Foot-and-Mouth Disease Surveillance using BioPortal,” in Intelligence and Security Informatics: BioSurveillance, edited by Zeng, D., Gotham, I., Komatsu, K., Lynch, C., Thurmond, M., Madigan, D., Lober, B., Kvach, J., and Chen, H., Springer Lecture Notes in Computer Science, No. 4506.

Lu, H.-M., King, C.-C., Wu, T.S., Shin, F.-Y., Hsiao, J.-Y., Zeng, D., and Chen, H. (2007). “Chinese Chief Complaint Classification for Syndromic Surveillance,” in Intelligence and Security Informatics: BioSurveillance, edited by Zeng, D., Gotham, I., Komatsu, K., Lynch, C., Thurmond, M., Madigan, D., Lober, B., Kvach, J., and Chen, H., Springer Lecture Notes in Computer Science, No. 4506.

Hu, P., Zeng, D., Chen, H., Larson, C., Tseng, C. (2007). “A Web-based System for Infectious Disease Data Integration and Sharing: Evaluating Outcome, Task Performance Efficiency, User Information Satisfaction, and Usability,” in Intelligence and Security Informatics: BioSurveillance, edited by Zeng, D., Gotham, I., Komatsu, K., Lynch, C., Thurmond, M., Madigan, D., Lober, B., Kvach, J., and Chen, H., Springer Lecture Notes in Computer Science, No. 4506.

Zeng, D., Chen, H., and Yan, P. (2007). “Infectious Disease Informatics and Syndromic Surveillance,” in Digital Government, Chapter 26, Springer.

Zeng, D., Chen, H., and Chang, W. (2007). “Spatiao-Temporal Data Analysis in Security Informatics,” in Handbooks in Information Systems: National Security, Elsevier, edited by H. Chen, T.S. Raghu, R. Ramesh, A. Vinze, and D. Zeng, in press.

Ma, J., Zeng, D., and Chen, H. (2006). “Spatial-Temporal Cross-Correlation Analysis: A New Measure and A Case Study in Infectious Disease Informatics,” in Intelligence and Security Informatics, Proceedings of the IEEE International Conference on Intelligence and Security Informatics (ISI-2006), edited by Sharad Mehrotra, Daniel Zeng, Hsinchun Chen, Bhavani Thuraisingham, and Fei-Yue Wang, Springer Lecture Notes in Computer Science, Vol. 3975.

Yan, P., Zeng, D., and Chen, H. (2006). “A Review of Public Health Syndromic Surveillance Systems,” in Intelligence and Security Informatics, Proceedings of the IEEE International Conference on Intelligence and Security Informatics (ISI-2006), edited by Sharad Mehrotra, Daniel Zeng, Hsinchun Chen, Bhavani Thuraisingham, and Fei-Yue Wang, Springer Lecture Notes in Computer Science, Vol. 3975.

Hu, P., Zeng, D., Chen, H., Larson, C., Chang, W., and Tseng, L. (2005). “Evaluating an Infectious Disease Information Sharing and Analysis Systems,” in Intelligence and Security Informatics, Proceedings of the IEEE International Conference on Intelligence and Security Informatics (ISI-2005), edited by Paul Kantor, Gheorghe Muresan, Fred Roberts, Daniel Zeng, Fei-Yue Wang, Hsinchun Chen, and Ralph Merkle, Springer Lecture Notes in Computer Science, Vol. 3495.

 Zeng, D., Chen, H., Eidson, M., Gotham, I., and Lynch, C. (2005). “Disease Informatics and Outbreak Detection,” Chapter 13, in Advances in Medical Informatics: Knowledge Management and Data Mining in Biomedicine, edited by Hsinchun Chen, Sherrilynne Fuller, and Alexa McCray, Springer-Verlag.

Zeng, D., Chen, H., Tseng, L., Larson, C., Eidson, M., Gotham, I., Lynch, C., and Ascher, M. (2004). “West Nile Virus and Botulism Portal: A Case Study in Infectious Disease Informatics,” in Intelligence and Security Informatics, Proceedings of ISI-2004, Lecture Notes in Computer Science, pp. 28–41, Vol. 3073, Chen, H., Moore, R., Zeng, D., and Leavitt, J. (eds), Springer.

Lu, H.-M., Zeng, D., and Chen, H. (2006). “Ontology-based Automatic Chief Complaints Classification for Syndromic Surveillance,” Proceedings of the 2006 IEEE International Conference on Systems, Man, and Cybernetics, IEEE Press, Taipei, Taiwan, October.

Sun R., Zeng, D., and Yan, P. (2006). “A Network-based Burst Detection Method in Data Streams,” Proceedings of the Fifth Workshop on e-Business (WeB 2006), Milwaukee, Wisconsin, December.

Refereed Conference Publications

Chen, Y., Tseng, C., King, C.C., Wu, T., and Chen, H., “Incorporating Geographical Contacts into Social Network Analysis for Contact Tracing in Epidemiology: A Study on Taiwan SARS Data,” Intelligence and Security Informatics: Biosurveillance, Proceedings of the Second Workshop, BioSurveillance 2007, New Brunswick, NJ, May 2007, Lecture Notes in Computer Science (LNCS 4506), Springer-Verlag.

Lu, H., Zeng, D., and Chen, H., “Medical Ontology-enhanced Text Processing for Infectious Disease Informatics,” Proceedings of 2007 IEEE Intelligence and Security Informatics, ISI 2007, New Brunswick, NJ, May 2007.

Chen, H., Zeng, D., Tseng, C., Larson, C., Eidson, M., Gotham, I., Lynch, C., and Hu, P., “A National Center of Excellence for Infectious Disease Informatics,” Proceedings of the 6th National Conference on Digital Government Research, DG.O 2005, Atlanta, Georgia, May 2005.

Zeng,D., Chen, H., Tseng, C., Larson, C., Eidson, M., Gotham, I., Lynch, C., and Ascher, M., “BioPortal: An Integrated Infectious Disease Information Sharing and Analysis Environment,” Proceedings of the 6th National Conference on Digital Government Research, DG.O 2005, Atlanta, Georgia, May 2005.

Chen, H., “Biomedical Informatics and Security Informatics Research in Digital Library,” Proceedings of the 7th International Conference on Asian Digital Libraries, ICADL 2004, Shanghai, China, December 2004, Lecture Notes in Computer Science (LNCS 3334), Springer-Verlag.

Zeng, D., Chang, W., and Chen, H., “A Comparative Analysis of Spatio-Temporal Hotspot Analysis Techniques in Security Informatics,” Proceedings of the 7th IEEE International Conference on Intelligent Transportation Systems (ITSC 2004), Washington, DC, October 3-6, 2004.

Atabakhsh, H., Larson, C., Petersen, T., Violette, C., and Chen, H., “Information Sharing and Collaboration Policies within Government Agencies,” Intelligence and Security Informatics, Proceedings of the Second Symposium on Intelligence and Security Informatics, ISI 2004, Tucson, Arizona, June 2004, Lecture Notes in Computer Science (LNCS 3073), Springer-Verlag.

Zhou, Y., Qin, J., and Chen, H., “CMedPort: Intelligent Searching for Chinese Medical Information,” Proceedings of the 6th International Conference on Asian Digital Libraries, ICADL 2003, Kuala Lumpur, Malaysia, December 2003, Lecture Notes in Computer Science (LNCS 2911), Springer-Verlag.

Zeng, D., Chen, H., Tseng, C., Larson, C., Eidson, M., Gotham, I., Lynch, C., and Ascher, M., “Towards a National Infectious Disease Information Infrastructure: A Case Study in West Nile Virus and Botulism,” Proceedings of the National Conference on Digital Government Research, DG.O 2004, Seattle, Washington, May 2004, Digital Government Research Center.